RNAnix · predict a structure

← Atlas Explorer Adding a new model instructions

Input

Entities RNA · protein · DNA · ligand

0 residues

Name (optional) Model

Options Alignments

None = single-sequence (fastest). MSA / rMSA condition on alignments (slower, usually more accurate).

Seeds Samples / seed

Relax structures (OpenMM)

Post-process each pick with energy minimization and keep whichever of raw/relaxed has fewer clashes. Recommended; adds some time per prediction.

Expert mode — literature-informed templates

Claude researches this RNA's family and curates a 3D template from homologous PDB structures before folding. Slower (adds real minutes of research time) and more thorough.

Submit a sequence to predict its 3D structure. Runs single-sequence by default (fast); tick “compute MSA” for a slower, usually more accurate model.